Fakultät Informatik und Mathematik
Regensburg Center for Artificial Intelligence
Regensburg Center of Biomedical Engineering
Regensburg Center of Health Sciences and Technology

Prof. Dr. rer nat. Christoph Palm

ML4Gastro - AI projects for computer assistance in endoscopy of the upper gastrointestinal tract

Project description

Motivation

Reflux is the increased backflow of acidic stomach contents into the esophagus. Chronic reflux is the main cause of the Barrett's esophagus, a lesion of the mucous membrane with an increased risk of developing esophageal cancer. The survival chances of affected patients are considered poor, as the disease is usually diagnosed at a late stage. If a standard drug treatment of reflux is not successful, an endoscopic examination may be indicated to detect treatable symptoms as early as possible. However, this is not unproblematic, because many reflux patients are endoscopically negative, i.e. mucous membrane lesions are not visible despite the presence of disease (low sensitivity of the examination). The significance in case of a pathological finding is relatively high (high specificity of the examination).

Goals and procedure

Machine learning methods are increasingly being used in diagnostic imaging procedures. With the help of deep learning approaches, the physician should be supported in reliably detecting reflux-related mucous membrane damage, in particular (pre-)carcinogenic lesions, when evaluating endoscopic images. Based on the machine evaluation of endoscopic images, conclusions on the severity of a possible disease should be drawn. Through the use of Deep Learning, a quality in the diagnostic evaluation of medical images has been achieved several times in recent years that not only reaches the medical "gold standard", but even exceeds it. This means that physician and computer meet at eye level, so that in the future, for example, the computer could at least be established as a second assessor.

Cooperation partners

  • Regensburg Medical Image Computing, Ostbayerische Technische Hochschule Regensburg
    • Prof. Dr. Christoph Palm
    • Robert Mendel
    • David Rauber
  • III. Medical Clinic, Klinikum Augsburg
    • Prof. Dr. Helmut Messmann
    • Dr. Alanna Ebigbo
    • Dr. Andreas Probst
  • Department of Computing, São Paulo State UniversitySão Paulo, Brazil
    • Prof. João Papa, PhD
    • Luis Antonio de Souza Jr.

Software Download

You can download the code on the SemiSup code page.

Publications

Palm, Christoph (Prof. Dr.) - Projekt Barrett

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 |

2024

Luis Antonio de Souza Jr., André G.C. Pacheco, Leandro A. Passos, Marcos C. S. Santana, Robert Mendel, Alanna Ebigbo, Andreas Probst, Helmut Messmann, Christoph Palm, João Paulo Papa DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
D. A. Roser, Michael Meinikheim, Robert Mendel, Christoph Palm, Andreas Probst, A. Muzalyova, Markus W. Scheppach, S. Nagl, Elisabeth Schnoy, Christoph Römmele, D. Schulz, Jakob Schlottmann, Friederike Prinz, David Rauber, Tobias Rückert, T. Matsumura, G. Fernandez-Esparrach, N. Parsa, M. Byrne, Helmut Messmann, Alanna Ebigbo Human-Computer Interaction: Impact of Artificial Intelligence on the diagnostic confidence of endoscopists assessing videos of Barrett’s esophagus
Michael Meinikheim, Robert Mendel, Christoph Palm, Andreas Probst, Anna Muzalyova, Markus W. Scheppach, Sandra Nagl, Elisabeth Schnoy, Christoph Römmele, Dominik A. H. Schulz, Jakob Schlottmann, Friederike Prinz, David Rauber, Tobias Rueckert, Tomoaki Matsumura, Glòria Fernández-Esparrach, Nasim Parsa, Michael F. Byrne, Helmut Messmann, Alanna Ebigbo Influence of artificial intelligence on the diagnostic performance of endoscopists in the assessment of Barrett’s esophagus: a tandem randomized and video trial
Luis Antonio de Souza Jr., Leandro A. Passos, Marcos Cleison S. Santana, Robert Mendel, David Rauber, Alanna Ebigbo, Andreas Probst, Helmut Messmann, João Paulo Papa, Christoph Palm Layer-selective deep representation to improve esophageal cancer classification

2023

Michael Meinikheim, Robert Mendel, Andreas Probst, Markus W. Scheppach, Sandra Nagl, Elisabeth Schnoy, Christoph Römmele, Friederike Prinz, Jakob Schlottmann, Helmut Messmann, Christoph Palm, Alanna Ebigbo Einfluss von Künstlicher Intelligenz auf die Performance von niedergelassenen Gastroenterolog:innen bei der Beurteilung von Barrett-Ösophagus

2022

Michael Meinikheim, Robert Mendel, Markus W. Scheppach, Andreas Probst, Friederike Prinz, Tanja Schwamberger, Jakob Schlottmann, Stefan Karl Gölder, Benjamin Walter, Ingo Steinbrück, Christoph Palm, Helmut Messmann, Alanna Ebigbo Einsatz von künstlicher Intelligenz (KI) als Entscheidungsunterstützungssystem für nicht-Experten bei der Beurteilung von Barrett-Ösophagus assoziierten Neoplasien (BERN)
Alanna Ebigbo, Robert Mendel, Andreas Probst, Michael Meinikheim, Michael F. Byrne, Helmut Messmann, Christoph Palm Multimodal imaging for detection and segmentation of Barrett’s esophagus-related neoplasia using artificial intelligence

2021

Alanna Ebigbo, Christoph Palm, Helmut Messmann Barrett esophagus: What to expect from Artificial Intelligence?
Luis Antonio de Souza Jr., Robert Mendel, Sophia Strasser, Alanna Ebigbo, Andreas Probst, Helmut Messmann, João Paulo Papa, Christoph Palm Convolutional Neural Networks for the evaluation of cancer in Barrett’s esophagus: Explainable AI to lighten up the black-box
Alanna Ebigbo, Robert Mendel, Tobias Rückert, Laurin Schuster, Andreas Probst, Johannes Manzeneder, Friederike Prinz, Matthias Mende, Ingo Steinbrück, Siegbert Faiss, David Rauber, Luis Antonio de Souza Jr., João Paulo Papa, Pierre Deprez, Tsuneo Oyama, Akiko Takahashi, Stefan Seewald, Prateek Sharma, Michael F. Byrne, Christoph Palm, Helmut Messmann Endoscopic prediction of submucosal invasion in Barrett’s cancer with the use of Artificial Intelligence: A pilot Study
Luis Antonio de Souza Jr., Leandro A. Passos, Robert Mendel, Alanna Ebigbo, Andreas Probst, Helmut Messmann, Christoph Palm, João Paulo Papa Fine-tuning Generative Adversarial Networks using Metaheuristics

2020

Luis Antonio de Souza Jr., Leandro A. Passos, Robert Mendel, Alanna Ebigbo, Andreas Probst, Helmut Messmann, Christoph Palm, João Paulo Papa Assisting Barrett's esophagus identification using endoscopic data augmentation based on Generative Adversarial Networks
Alanna Ebigbo, Robert Mendel, Georgios Tziatzios, Andreas Probst, Christoph Palm, Helmut Messmann Real-Time Diagnosis of an Early Barrett's Carcinoma using Artificial Intelligence (AI) - Video Case Demonstration
Alanna Ebigbo, Robert Mendel, Andreas Probst, Johannes Manzeneder, Friederike Prinz, Luis Antonio de Souza Jr., João Paulo Papa, Christoph Palm, Helmut Messmann Real-time use of artificial intelligence in the evaluation of cancer in Barrett’s oesophagus

2019

Alanna Ebigbo, Christoph Palm, Andreas Probst, Robert Mendel, Johannes Manzeneder, Friederike Prinz, Luis Antonio de Souza Jr., João Paulo Papa, Peter Siersema, Helmut Messmann A technical review of artificial intelligence as applied to gastrointestinal endoscopy: clarifying the terminology
Alanna Ebigbo, Robert Mendel, Andreas Probst, Johannes Manzeneder, Luis Antonio de Souza Jr., João Paulo Papa, Christoph Palm, Helmut Messmann Artificial Intelligence in Early Barrett's Cancer: The Segmentation Task
Leandro A. Passos, Luis Antonio de Souza Jr., Robert Mendel, Alanna Ebigbo, Andreas Probst, Helmut Messmann, Christoph Palm, João Paulo Papa Barrett's esophagus analysis using infinity Restricted Boltzmann Machines
Alanna Ebigbo, Robert Mendel, Andreas Probst, Johannes Manzeneder, Luis Antonio de Souza Jr., João Paulo Papa, Christoph Palm, Helmut Messmann Computer-aided diagnosis using deep learning in the evaluation of early oesophageal adenocarcinoma

2018

Luis Antonio de Souza Jr., Christoph Palm, Robert Mendel, Christian Hook, Alanna Ebigbo, Andreas Probst, Helmut Messmann, Silke A. T. Weber, João Paulo Papa A survey on Barrett's esophagus analysis using machine learning
Luis Antonio de Souza Jr., Alanna Ebigbo, Andreas Probst, Helmut Messmann, João Paulo Papa, Robert Mendel, Christoph Palm Barrett's Esophagus Identification Using Color Co-occurrence Matrices

2017

Luis Antonio de Souza Jr., Christian Hook, João Paulo Papa, Christoph Palm Barrett's Esophagus Analysis Using SURF Features
Luis Antonio de Souza Jr., Luis Claudio Sugi Afonso, Christoph Palm, João Paulo Papa Barrett's Esophagus Identification Using Optimum-Path Forest
Robert Mendel, Alanna Ebigbo, Andreas Probst, Helmut Messmann, Christoph Palm Barrett’s Esophagus Analysis Using Convolutional Neural Networks

Michael Meinikheim, Robert Mendel, Christoph Palm, Andreas Probst, Anna Muzalyova, Markus Wolfgang Scheppach, Sandra Nagl, Elisabeth Schnoy, Christoph Römmele, Dominik Andreas Helmut Otto Schulz, Jakob Schlottmann, Friederike Prinz, David Rauber, Tobias Rückert, Tomoaki Matsumura, Glòria Fernández-Esparrach, Nasim Parsa, Michael F Byrne, Helmut Messmann, Alanna Ebigbo Effect of AI on performance of endoscopists to detect Barrett neoplasia: A Randomized Tandem Trial
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